SNP Detail For rs1292011
1.Mapping Information
Human SNP ID rs1292011
Human chromosome chr12
Human SNP position 115398717
Pig chromosome chr14
Pig SNP position 39161742
2.Annotation Information
PubMed ID23535729
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23535729
StudyLarge-scale genotyping identifies 41 new loci associated with breast cancer risk.
Disease/TraitBreast cancer
Initial sample10,052 European ancestry cases, 12,575 European ancestry controls
Replication sample45,290 European ancestry cases, 41,880 European ancestry controls
Region12q24.21
Chromosome idchr12
Chromosome position115398717
Reported geneintergenic
Mapped geneLOC105370003
Upstream gene id
Downstream gene id
SNP gene ids105370003
Upstream gene distance
Downstream gene distance
SNP risk allelers1292011-A
SNPsrs1292011
Merged0
SNP id current1292011
Contextregulatory_region_variant
Intergenic0
Allele frequency0.58
P value9E-22
Pvalue mlog21.0457574905606
P value text
Or beta1.09
%95 Ci[1.06-1.11]
PlatformAffymetrix, Illumina [~ 2600000] (imputed)
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST001937