SNP Detail For rs12910412
1.Mapping Information
Human SNP ID rs12910412
Human chromosome chr15
Human SNP position 94163844
Pig chromosome chr7
Pig SNP position 90937450
2.Annotation Information
PubMed ID25241909
JournalRespir Res
Linkwww.ncbi.nlm.nih.gov/pubmed/25241909
StudyGenetic susceptibility for chronic bronchitis in chronic obstructive pulmonary disease.
Disease/TraitChronic bronchitis and chronic obstructive pulmonary disease
Initial sampleup to 1,662 European ancestry cases, up to 3,520 European ancestry smoker controls, 182 African American cases, 1,749 African American smoker controls
Replication sampleNA
Region15q26.2
Chromosome idchr15
Chromosome position94163844
Reported geneMCTP2
Mapped geneLINC01581 - LOC105370984
Upstream gene id101927112
Downstream gene id105370984
SNP gene ids
Upstream gene distance55906
Downstream gene distance32935
SNP risk allelers12910412-G
SNPsrs12910412
Merged0
SNP id current12910412
Contextupstream_gene_variant
Intergenic1
Allele frequency0.46
P value0.0000005
Pvalue mlog6.30102999566398
P value text(EA)
Or beta1.3
%95 Ci[1.17-1.44]
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitchronic obstructive pulmonary disease, chronic bronchitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0006505
Study accessionGCST002625