Human SNP ID | rs12910412 |
---|---|
Human chromosome | chr15 |
Human SNP position | 94163844 |
Pig chromosome | chr7 |
Pig SNP position | 90937450 |
PubMed ID | 25241909 |
---|---|
Journal | Respir Res |
Link | www.ncbi.nlm.nih.gov/pubmed/25241909 |
Study | Genetic susceptibility for chronic bronchitis in chronic obstructive pulmonary disease. |
Disease/Trait | Chronic bronchitis and chronic obstructive pulmonary disease |
Initial sample | up to 1,662 European ancestry cases, up to 3,520 European ancestry smoker controls, 182 African American cases, 1,749 African American smoker controls |
Replication sample | NA |
Region | 15q26.2 |
Chromosome id | chr15 |
Chromosome position | 94163844 |
Reported gene | MCTP2 |
Mapped gene | LINC01581 - LOC105370984 |
Upstream gene id | 101927112 |
Downstream gene id | 105370984 |
SNP gene ids | |
Upstream gene distance | 55906 |
Downstream gene distance | 32935 |
SNP risk allele | rs12910412-G |
SNPs | rs12910412 |
Merged | 0 |
SNP id current | 12910412 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.46 |
P value | 0.0000005 |
Pvalue mlog | 6.30102999566398 |
P value text | (EA) |
Or beta | 1.3 |
%95 Ci | [1.17-1.44] |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | chronic obstructive pulmonary disease, chronic bronchitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0006505 |
Study accession | GCST002625 |