Human SNP ID | rs12905014 |
---|---|
Human chromosome | chr15 |
Human SNP position | 92340610 |
Pig chromosome | chr7 |
Pig SNP position | 92515608 |
PubMed ID | 22837378 |
---|---|
Journal | Am J Respir Crit Care Med |
Link | www.ncbi.nlm.nih.gov/pubmed/22837378 |
Study | Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction. |
Disease/Trait | Airflow obstruction |
Initial sample | up to 3,368 European ancestry cases, up to 29,507 European ancestry controls |
Replication sample | 331 European ancestry cases, 2,550 European ancestry controls |
Region | 15q26.1 |
Chromosome id | chr15 |
Chromosome position | 92340610 |
Reported gene | ST8SIA2 |
Mapped gene | NPM1P5 - ST8SIA2 |
Upstream gene id | 4874 |
Downstream gene id | 8128 |
SNP gene ids | |
Upstream gene distance | 53376 |
Downstream gene distance | 53300 |
SNP risk allele | rs12905014-? |
SNPs | rs12905014 |
Merged | 0 |
SNP id current | 12905014 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.05 |
P value | 0.0000004 |
Pvalue mlog | 6.39794000867203 |
P value text | (FEV1 65%) |
Or beta | 1.7544 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [up to 2500000] (imputed) |
CNV | N |
Mapped trait | pulmonary function measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003892 |
Study accession | GCST001621 |