SNP Detail For rs12905014
1.Mapping Information
Human SNP ID rs12905014
Human chromosome chr15
Human SNP position 92340610
Pig chromosome chr7
Pig SNP position 92515608
2.Annotation Information
PubMed ID22837378
JournalAm J Respir Crit Care Med
Linkwww.ncbi.nlm.nih.gov/pubmed/22837378
StudyGenome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.
Disease/TraitAirflow obstruction
Initial sampleup to 3,368 European ancestry cases, up to 29,507 European ancestry controls
Replication sample331 European ancestry cases, 2,550 European ancestry controls
Region15q26.1
Chromosome idchr15
Chromosome position92340610
Reported geneST8SIA2
Mapped geneNPM1P5 - ST8SIA2
Upstream gene id4874
Downstream gene id8128
SNP gene ids
Upstream gene distance53376
Downstream gene distance53300
SNP risk allelers12905014-?
SNPsrs12905014
Merged0
SNP id current12905014
Contextintergenic_variant
Intergenic1
Allele frequency0.05
P value0.0000004
Pvalue mlog6.39794000867203
P value text(FEV1 65%)
Or beta1.7544
%95 Ci[NR]
PlatformAffymetrix, Illumina [up to 2500000] (imputed)
CNVN
Mapped traitpulmonary function measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003892
Study accessionGCST001621