SNP Detail For rs12899449
1.Mapping Information
Human SNP ID rs12899449
Human chromosome chr15
Human SNP position 38703290
Pig chromosome chr1
Pig SNP position 147980342
2.Annotation Information
PubMed ID18711365
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18711365
StudyCollaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.
Disease/TraitBipolar disorder
Initial sample4,387 European ancestry cases, 6,209 European ancestry controls
Replication sampleNA
Region15q14
Chromosome idchr15
Chromosome position38703290
Reported geneC15orf53, RASGRP1
Mapped geneC15orf53 - LOC105370776
Upstream gene id400359
Downstream gene id105370776
SNP gene ids
Upstream gene distance3252
Downstream gene distance26453
SNP risk allelers12899449-?
SNPsrs12899449
Merged0
SNP id current12899449
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.72
P value0.0000004
Pvalue mlog6.39794000867203
P value text
Or beta1.2
%95 Ci[NR]
PlatformAffymetrix [1769948] (imputed)
CNVN
Mapped traitbipolar disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000289
Study accessionGCST000220