SNP Detail For rs12898179
1.Mapping Information
Human SNP ID rs12898179
Human chromosome chr14
Human SNP position 67497454
Pig chromosome chr7
Pig SNP position 97519878
2.Annotation Information
PubMed ID26420894
JournalNephrol Dial Transplant
Linkwww.ncbi.nlm.nih.gov/pubmed/26420894
StudyGenetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.
Disease/TraitGlomerular filtration rate in chronic kidney disease
Initial sampleup to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases
Replication sampleNA
Region14q24.1
Chromosome idchr14
Chromosome position67497454
Reported geneTMEM229B
Mapped geneTMEM229B
Upstream gene id
Downstream gene id
SNP gene ids161145
Upstream gene distance
Downstream gene distance
SNP risk allelers12898179-C
SNPsrs12898179
Merged
SNP id current12898179
Contextintron_variant
Intergenic0
Allele frequency0.79
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta0.08
%95 Ci[0.041-0.119] unit decrease
PlatformIllumina [~ 8300000] (imputed)
CNVN
Mapped traitglomerular filtration rate, chronic kidney disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005208, http://www.ebi.ac.uk/efo/EFO_0003884
Study accessionGCST003139