Human SNP ID | rs12882718 |
---|---|
Human chromosome | chr14 |
Human SNP position | 86435710 |
Pig chromosome | chr7 |
Pig SNP position | 115009149 |
PubMed ID | 23648065 |
---|---|
Journal | Cancer Sci |
Link | www.ncbi.nlm.nih.gov/pubmed/23648065 |
Study | Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. |
Disease/Trait | Adverse response to chemotherapy (neutropenia/leucopenia) (all antimicrotubule drugs) |
Initial sample | 371 Japanese ancestry cases, 825 Japanese ancestry controls |
Replication sample | NA |
Region | 14q31.3 |
Chromosome id | chr14 |
Chromosome position | 86435710 |
Reported gene | LOC100421119 |
Mapped gene | LOC105370607 - LOC283585 |
Upstream gene id | 105370607 |
Downstream gene id | 283585 |
SNP gene ids | |
Upstream gene distance | 78070 |
Downstream gene distance | 470068 |
SNP risk allele | rs12882718-T |
SNPs | rs12882718 |
Merged | 0 |
SNP id current | 12882718 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.643 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | (Dominant model) |
Or beta | 1.555 |
%95 Ci | [1.283-1.884] |
Platform | Illumina [733202] |
CNV | N |
Mapped trait | response to antineoplastic agent, response to antimicrotubule agent |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0097327, http://www.ebi.ac.uk/efo/EFO_0005260 |
Study accession | GCST002001 |