SNP Detail For rs12882679
1.Mapping Information
Human SNP ID rs12882679
Human chromosome chr14
Human SNP position 79380895
Pig chromosome chr7
Pig SNP position 108565264
2.Annotation Information
PubMed ID25133637
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/25133637
StudyGenome-wide association studies and heritability estimates of body mass index related phenotypes in bangladeshi adults.
Disease/TraitUnderweight status
Initial sample953 Bangladeshi ancestry underweight females, 1,269 Bangladeshi ancestry normal weight females, 1,146 Bangladeshi ancestry underweight males, 1,106 normal weight males
Replication sampleNA
Region14q31.1
Chromosome idchr14
Chromosome position79380895
Reported geneNRXN3
Mapped geneNRXN3
Upstream gene id
Downstream gene id
SNP gene ids9369
Upstream gene distance
Downstream gene distance
SNP risk allelers12882679-G
SNPsrs12882679
Merged0
SNP id current12882679
Contextintron_variant
Intergenic0
Allele frequency0.687
P value0.000001
Pvalue mlog6
P value text
Or beta0.057
%95 Ci[0.033-0.081] unit increase
PlatformIllumina [1208102] (imputed)
CNVN
Mapped traitunderweight body mass index status
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005936
Study accessionGCST002569