SNP Detail For rs12868495
1.Mapping Information
Human SNP ID rs12868495
Human chromosome chr13
Human SNP position 34067425
Pig chromosome chr11
Pig SNP position 10286892
2.Annotation Information
PubMed ID25208829
JournalGenes Immun
Linkwww.ncbi.nlm.nih.gov/pubmed/25208829
StudyGenome-wide association study of vitamin D levels in children: replication in the Western Australian Pregnancy Cohort (Raine) study.
Disease/TraitVitamin D levels
Initial sample645 European ancestry age 6 individuals, 28 age 6 individuals, 1,073 European ancestry age 14 individuals, 67 age 14 individuals
Replication sampleNA
Region13q13.2
Chromosome idchr13
Chromosome position34067425
Reported geneVDAC1P12
Mapped geneLOC105370156 - LOC105370158
Upstream gene id105370156
Downstream gene id105370158
SNP gene ids
Upstream gene distance66768
Downstream gene distance280518
SNP risk allelers12868495-A
SNPsrs12868495
Merged0
SNP id current12868495
Contextintergenic_variant
Intergenic1
Allele frequency0.03
P value0.0000006
Pvalue mlog6.22184874961635
P value text(Age 6)
Or beta1.22
%95 Ci[1.13-1.32] unit increase
PlatformIllumina [2461244] (imputed)
CNVN
Mapped traitvitamin D measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004631
Study accessionGCST002602