Human SNP ID | rs12868495 |
---|---|
Human chromosome | chr13 |
Human SNP position | 34067425 |
Pig chromosome | chr11 |
Pig SNP position | 10286892 |
PubMed ID | 25208829 |
---|---|
Journal | Genes Immun |
Link | www.ncbi.nlm.nih.gov/pubmed/25208829 |
Study | Genome-wide association study of vitamin D levels in children: replication in the Western Australian Pregnancy Cohort (Raine) study. |
Disease/Trait | Vitamin D levels |
Initial sample | 645 European ancestry age 6 individuals, 28 age 6 individuals, 1,073 European ancestry age 14 individuals, 67 age 14 individuals |
Replication sample | NA |
Region | 13q13.2 |
Chromosome id | chr13 |
Chromosome position | 34067425 |
Reported gene | VDAC1P12 |
Mapped gene | LOC105370156 - LOC105370158 |
Upstream gene id | 105370156 |
Downstream gene id | 105370158 |
SNP gene ids | |
Upstream gene distance | 66768 |
Downstream gene distance | 280518 |
SNP risk allele | rs12868495-A |
SNPs | rs12868495 |
Merged | 0 |
SNP id current | 12868495 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.03 |
P value | 0.0000006 |
Pvalue mlog | 6.22184874961635 |
P value text | (Age 6) |
Or beta | 1.22 |
%95 Ci | [1.13-1.32] unit increase |
Platform | Illumina [2461244] (imputed) |
CNV | N |
Mapped trait | vitamin D measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004631 |
Study accession | GCST002602 |