SNP Detail For rs1285407
1.Mapping Information
Human SNP ID rs1285407
Human chromosome chr7
Human SNP position 9226758
Pig chromosome chr9
Pig SNP position 87262248
2.Annotation Information
PubMed ID18464913
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18464913
StudyA genome-wide association study identifies protein quantitative trait loci (pQTLs).
Disease/TraitProtein quantitative trait loci
Initial sample1,200 European ancestry individuals
Replication sampleup to 4,590 European ancestry individuals
Region7p21.3
Chromosome idchr7
Chromosome position9226758
Reported geneNXPH1
Mapped geneRPL9P19 - GAPDHP68
Upstream gene id100129634
Downstream gene id100132601
SNP gene ids
Upstream gene distance287304
Downstream gene distance388150
SNP risk allelers1285407-?
SNPsrs1285407
Merged0
SNP id current1285407
Contextintergenic_variant
Intergenic1
Allele frequency0.35
P value0.000001
Pvalue mlog6
P value text(TGF-b1)
Or beta
%95 Ci
PlatformIllumina [496032]
CNVN
Mapped traittransforming growth factor beta measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004818
Study accessionGCST000189