Human SNP ID | rs1285407 |
---|---|
Human chromosome | chr7 |
Human SNP position | 9226758 |
Pig chromosome | chr9 |
Pig SNP position | 87262248 |
PubMed ID | 18464913 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/18464913 |
Study | A genome-wide association study identifies protein quantitative trait loci (pQTLs). |
Disease/Trait | Protein quantitative trait loci |
Initial sample | 1,200 European ancestry individuals |
Replication sample | up to 4,590 European ancestry individuals |
Region | 7p21.3 |
Chromosome id | chr7 |
Chromosome position | 9226758 |
Reported gene | NXPH1 |
Mapped gene | RPL9P19 - GAPDHP68 |
Upstream gene id | 100129634 |
Downstream gene id | 100132601 |
SNP gene ids | |
Upstream gene distance | 287304 |
Downstream gene distance | 388150 |
SNP risk allele | rs1285407-? |
SNPs | rs1285407 |
Merged | 0 |
SNP id current | 1285407 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.35 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (TGF-b1) |
Or beta | |
%95 Ci | |
Platform | Illumina [496032] |
CNV | N |
Mapped trait | transforming growth factor beta measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004818 |
Study accession | GCST000189 |