SNP Detail For rs12828102
1.Mapping Information
Human SNP ID rs12828102
Human chromosome chr12
Human SNP position 90916242
Pig chromosome chr5
Pig SNP position 96393605
2.Annotation Information
PubMed ID26584805
JournalGenes Nutr
Linkwww.ncbi.nlm.nih.gov/pubmed/26584805
StudyA genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.
Disease/TraitPlasma omega-3 polyunsaturated fatty acid levels (alphalinolenic acid)
Initial sample717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls
Replication sampleNA
Region12q21.33
Chromosome idchr12
Chromosome position90916242
Reported geneNR
Mapped geneLOC105369895 - LINC00615
Upstream gene id105369895
Downstream gene id439916
SNP gene ids
Upstream gene distance107091
Downstream gene distance1781
SNP risk allelers12828102-G
SNPsrs12828102
Merged
SNP id current12828102
Contextintron_variant
Intergenic1
Allele frequency0.93705655
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta0.1645
%95 Ci[0.092-0.237] unit increase
PlatformIllumina [up to 1980188] (imputed)
CNVN
Mapped trait
Mapped trait URI
Study accessionGCST003242