SNP Detail For rs12817211
1.Mapping Information
Human SNP ID rs12817211
Human chromosome chr12
Human SNP position 50185615
Pig chromosome chr5
Pig SNP position 16495327
2.Annotation Information
PubMed ID26621817
JournalSci Rep
Linkwww.ncbi.nlm.nih.gov/pubmed/26621817
StudyMeta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.
Disease/TraitColorectal or endometrial cancer
Initial sample5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls
Replication sampleNA
Region12q13.12
Chromosome idchr12
Chromosome position50185615
Reported geneLIMA1
Mapped geneLIMA1
Upstream gene id
Downstream gene id
SNP gene ids51474
Upstream gene distance
Downstream gene distance
SNP risk allelers12817211-C
SNPsrs12817211
Merged0
SNP id current12817211
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.767
P value0.000003
Pvalue mlog5.52287874528033
P value text(opposite direction)
Or beta1.12
%95 Ci[1.07-1.18]
PlatformIllumina [up to 6000000] (imputed)
CNVN
Mapped traitcolorectal cancer, endometrial neoplasm
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005842, http://www.ebi.ac.uk/efo/EFO_0004230
Study accessionGCST003209