Human SNP ID | rs12817211 |
---|---|
Human chromosome | chr12 |
Human SNP position | 50185615 |
Pig chromosome | chr5 |
Pig SNP position | 16495327 |
PubMed ID | 26621817 |
---|---|
Journal | Sci Rep |
Link | www.ncbi.nlm.nih.gov/pubmed/26621817 |
Study | Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1. |
Disease/Trait | Colorectal or endometrial cancer |
Initial sample | 5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls |
Replication sample | NA |
Region | 12q13.12 |
Chromosome id | chr12 |
Chromosome position | 50185615 |
Reported gene | LIMA1 |
Mapped gene | LIMA1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 51474 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12817211-C |
SNPs | rs12817211 |
Merged | 0 |
SNP id current | 12817211 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.767 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (opposite direction) |
Or beta | 1.12 |
%95 Ci | [1.07-1.18] |
Platform | Illumina [up to 6000000] (imputed) |
CNV | N |
Mapped trait | colorectal cancer, endometrial neoplasm |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842, http://www.ebi.ac.uk/efo/EFO_0004230 |
Study accession | GCST003209 |