SNP Detail For rs12807809
1.Mapping Information
Human SNP ID rs12807809
Human chromosome chr11
Human SNP position 124736389
Pig chromosome chr9
Pig SNP position 57481506
2.Annotation Information
PubMed ID19571808
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/19571808
StudyCommon variants conferring risk of schizophrenia.
Disease/TraitSchizophrenia
Initial sample2,663 European ancestry cases, 13,498 European ancestry controls
Replication sample10,282 European ancestry cases, 21,093 European ancestry controls
Region11q24.2
Chromosome idchr11
Chromosome position124736389
Reported geneNRGN
Mapped geneSPA17 - NRGN
Upstream gene id53340
Downstream gene id4900
SNP gene ids
Upstream gene distance38844
Downstream gene distance3544
SNP risk allelers12807809-T
SNPsrs12807809
Merged0
SNP id current12807809
Contextupstream_gene_variant
Intergenic1
Allele frequency0.83
P value0.000000002
Pvalue mlog8.69897000433601
P value text
Or beta1.15
%95 Ci[NR]
PlatformIllumina [314868]
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST000435