SNP Detail For rs12802200
1.Mapping Information
Human SNP ID rs12802200
Human chromosome chr11
Human SNP position 566936
Pig chromosome chr2
Pig SNP position 340420
2.Annotation Information
PubMed ID26502338
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26502338
StudyGenetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.
Disease/TraitSystemic lupus erythematosus
Initial sample5,201 European ancestry cases, 9,066 European ancestry controls
Replication sample2,018 European ancestry cases, 6,925 European ancestry controls
Region11p15.5
Chromosome idchr11
Chromosome position566936
Reported geneIRF7, LRRC56, LMNTD2, RASSF7, MIR210HG, PHRF1, CDHR5
Mapped geneMIR210HG
Upstream gene id
Downstream gene id
SNP gene ids100506211
Upstream gene distance
Downstream gene distance
SNP risk allelers12802200-C
SNPsrs12802200
Merged
SNP id current12802200
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency
P value0.0000000009
Pvalue mlog9.04575749056067
P value text
Or beta1.23
%95 Ci[1.15鈥?.31]
PlatformIllumina [644674]
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST003155