SNP Detail For rs12801636
1.Mapping Information
Human SNP ID rs12801636
Human chromosome chr11
Human SNP position 65623846
Pig chromosome chr2
Pig SNP position 5784842
2.Annotation Information
PubMed ID24097068
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24097068
StudyDiscovery and refinement of loci associated with lipid levels.
Disease/TraitHDL cholesterol
Initial sample94,595 European ancestry individuals
Replication sample93,982 European ancestry individuals
Region11q13.1
Chromosome idchr11
Chromosome position65623846
Reported geneKAT5
Mapped genePCNXL3
Upstream gene id
Downstream gene id
SNP gene ids399909
Upstream gene distance
Downstream gene distance
SNP risk allelers12801636-A
SNPsrs12801636
Merged0
SNP id current12801636
Contextintron_variant
Intergenic0
Allele frequency0.23
P value0.00000003
Pvalue mlog7.52287874528033
P value text
Or beta0.024
%95 Ci[NR] unit increase
PlatformNR [NR] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST002223