Human SNP ID | rs12801636 |
---|---|
Human chromosome | chr11 |
Human SNP position | 65623846 |
Pig chromosome | chr2 |
Pig SNP position | 5784842 |
PubMed ID | 24097068 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24097068 |
Study | Discovery and refinement of loci associated with lipid levels. |
Disease/Trait | HDL cholesterol |
Initial sample | 94,595 European ancestry individuals |
Replication sample | 93,982 European ancestry individuals |
Region | 11q13.1 |
Chromosome id | chr11 |
Chromosome position | 65623846 |
Reported gene | KAT5 |
Mapped gene | PCNXL3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 399909 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12801636-A |
SNPs | rs12801636 |
Merged | 0 |
SNP id current | 12801636 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.23 |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | |
Or beta | 0.024 |
%95 Ci | [NR] unit increase |
Platform | NR [NR] (imputed) |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST002223 |