SNP Detail For rs12777
1.Mapping Information
Human SNP ID rs12777
Human chromosome chr5
Human SNP position 132335969
Pig chromosome chr2
Pig SNP position 140037344
2.Annotation Information
PubMed ID26561523
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26561523
StudyA meta-analysis of 120,246 individuals identifies 18 new loci for fibrinogen concentration.
Disease/TraitFibrinogen levels
Initial sample120,246 European ancestry individuals
Replication sampleNA
Region5q31.1
Chromosome idchr5
Chromosome position132335969
Reported geneSLC22A4
Mapped geneLOC553103, SLC22A4
Upstream gene id
Downstream gene id
SNP gene ids553103, 6583
Upstream gene distance
Downstream gene distance
SNP risk allelers12777-G
SNPsrs12777
Merged0
SNP id current12777
Contextsynonymous_variant
Intergenic0
Allele frequency0.044
P value9E-27
Pvalue mlog26.0457574905606
P value text
Or beta0.024
%95 CiNR unit increase
PlatformAffymetrix, Illumina [~ 10700000] (imputed)
CNVN
Mapped traitfibrinogen measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004623
Study accessionGCST003194