SNP Detail For rs12773465
1.Mapping Information
Human SNP ID rs12773465
Human chromosome chr10
Human SNP position 97034302
Pig chromosome chr14
Pig SNP position 118116822
2.Annotation Information
PubMed ID24376456
JournalFront Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24376456
StudyGene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.
Disease/TraitMean arterial pressure (alcohol consumption interaction)
Initial sampleup to 6,882 individuals
Replication sampleNA
Region10q24.1
Chromosome idchr10
Chromosome position97034302
Reported geneSLIT1
Mapped geneSLIT1
Upstream gene id
Downstream gene id
SNP gene ids6585
Upstream gene distance
Downstream gene distance
SNP risk allelers12773465-G
SNPsrs12773465
Merged0
SNP id current12773465
Contextintron_variant
Intergenic0
Allele frequency0.84
P value0.0000002
Pvalue mlog6.69897000433601
P value text(drinks/week)
Or beta0.159
%95 Ci[0.098-0.220] unit decrease
PlatformAffymetrix [2500000] (imputed)
CNVN
Mapped traitmean arterial pressure, alcohol drinking
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006340, http://www.ebi.ac.uk/efo/EFO_0004329
Study accessionGCST002308