Human SNP ID | rs12773465 |
---|---|
Human chromosome | chr10 |
Human SNP position | 97034302 |
Pig chromosome | chr14 |
Pig SNP position | 118116822 |
PubMed ID | 24376456 |
---|---|
Journal | Front Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24376456 |
Study | Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9. |
Disease/Trait | Mean arterial pressure (alcohol consumption interaction) |
Initial sample | up to 6,882 individuals |
Replication sample | NA |
Region | 10q24.1 |
Chromosome id | chr10 |
Chromosome position | 97034302 |
Reported gene | SLIT1 |
Mapped gene | SLIT1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6585 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12773465-G |
SNPs | rs12773465 |
Merged | 0 |
SNP id current | 12773465 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.84 |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | (drinks/week) |
Or beta | 0.159 |
%95 Ci | [0.098-0.220] unit decrease |
Platform | Affymetrix [2500000] (imputed) |
CNV | N |
Mapped trait | mean arterial pressure, alcohol drinking |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006340, http://www.ebi.ac.uk/efo/EFO_0004329 |
Study accession | GCST002308 |