SNP Detail For rs12772243
1.Mapping Information
Human SNP ID rs12772243
Human chromosome chr10
Human SNP position 95535832
Pig chromosome chr14
Pig SNP position 116747475
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region10q24.1
Chromosome idchr10
Chromosome position95535832
Reported geneNR
Mapped geneSORBS1
Upstream gene id
Downstream gene id
SNP gene ids10580
Upstream gene distance
Downstream gene distance
SNP risk allelers12772243-G
SNPsrs12772243
Merged0
SNP id current12772243
Contextintron_variant
Intergenic0
Allele frequency0.0871224178571429
P value0.000005
Pvalue mlog5.30102999566398
P value text(IGP36)
Or beta0.2472
%95 Ci[0.14-0.35] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848