SNP Detail For rs12757404
1.Mapping Information
Human SNP ID rs12757404
Human chromosome chr1
Human SNP position 214456273
Pig chromosome chr9
Pig SNP position 141971269
2.Annotation Information
PubMed ID24386095
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24386095
StudyA genome wide association study identifies common variants associated with lipid levels in the Chinese population.
Disease/TraitLipid traits
Initial sample3,451 Han Chinese ancestry individuals
Replication sample8,830 Han Chinese ancestry individuals
Region1q41
Chromosome idchr1
Chromosome position214456273
Reported genePTPN14
Mapped genePTPN14
Upstream gene id
Downstream gene id
SNP gene ids5784
Upstream gene distance
Downstream gene distance
SNP risk allelers12757404-A
SNPsrs12757404
Merged0
SNP id current12757404
Contextintron_variant
Intergenic0
Allele frequency0.45
P value0.000002
Pvalue mlog5.69897000433601
P value text(TG)
Or beta0.01
%95 Cimmol/L decrease
PlatformAffymetrix, Illumina [up to 2249917] (imputed)
CNVN
Mapped traittriglyceride measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004530
Study accessionGCST002321