SNP Detail For rs1275468
1.Mapping Information
Human SNP ID rs1275468
Human chromosome chr12
Human SNP position 75541377
Pig chromosome chr5
Pig SNP position 42404208
2.Annotation Information
PubMed ID26416764
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/26416764
StudyCausal mechanisms and balancing selection inferred from genetic associations with polycystic ovary syndrome.
Disease/TraitPolycystic ovary syndrome
Initial sample5,184 European ancestry cases, 82,759 European ancestry controls
Replication sample374 European ancestry cases, 92,681 European ancestry controls, 1,671 cases, 6,205 controls
Region12q21.2
Chromosome idchr12
Chromosome position75541377
Reported geneKRR1
Mapped geneLOC105369845 - PGDP2
Upstream gene id105369845
Downstream gene id100129649
SNP gene ids
Upstream gene distance13509
Downstream gene distance58622
SNP risk allelers1275468-C
SNPsrs1275468
Merged
SNP id current1275468
Contextintergenic_variant
Intergenic1
Allele frequency0.75
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta1.13
%95 Ci[1.08鈥?.18]
PlatformIllumina [~ 9000000] (imputed)
CNVN
Mapped traitpolycystic ovary syndrome
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000660
Study accessionGCST003144