Human SNP ID | rs1275468 |
---|---|
Human chromosome | chr12 |
Human SNP position | 75541377 |
Pig chromosome | chr5 |
Pig SNP position | 42404208 |
PubMed ID | 26416764 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26416764 |
Study | Causal mechanisms and balancing selection inferred from genetic associations with polycystic ovary syndrome. |
Disease/Trait | Polycystic ovary syndrome |
Initial sample | 5,184 European ancestry cases, 82,759 European ancestry controls |
Replication sample | 374 European ancestry cases, 92,681 European ancestry controls, 1,671 cases, 6,205 controls |
Region | 12q21.2 |
Chromosome id | chr12 |
Chromosome position | 75541377 |
Reported gene | KRR1 |
Mapped gene | LOC105369845 - PGDP2 |
Upstream gene id | 105369845 |
Downstream gene id | 100129649 |
SNP gene ids | |
Upstream gene distance | 13509 |
Downstream gene distance | 58622 |
SNP risk allele | rs1275468-C |
SNPs | rs1275468 |
Merged | |
SNP id current | 1275468 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.75 |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | |
Or beta | 1.13 |
%95 Ci | [1.08鈥?.18] |
Platform | Illumina [~ 9000000] (imputed) |
CNV | N |
Mapped trait | polycystic ovary syndrome |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000660 |
Study accession | GCST003144 |