SNP Detail For rs12742923
1.Mapping Information
Human SNP ID rs12742923
Human chromosome chr1
Human SNP position 83024161
Pig chromosome chr6
Pig SNP position 120892070
2.Annotation Information
PubMed ID22628157
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22628157
StudyGenome-wide association study of neurocognitive impairment and dementia in HIV-infected adults.
Disease/TraitHIV-associated dementia
Initial sample1,287 European ancestry HIV-infected male individuals
Replication sampleNA
Region1p31.1
Chromosome idchr1
Chromosome position83024161
Reported geneintergenic
Mapped geneLINC01362 - LOC105378817
Upstream gene id103283057
Downstream gene id105378817
SNP gene ids
Upstream gene distance26578
Downstream gene distance41767
SNP risk allelers12742923-T
SNPsrs12742923
Merged0
SNP id current12742923
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.0000008
Pvalue mlog6.09691001300805
P value text(NCI)
Or beta
%95 Ci
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitAIDS dementia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002608
Study accessionGCST001542