Human SNP ID | rs12726652 |
---|---|
Human chromosome | chr1 |
Human SNP position | 106889954 |
Pig chromosome | chr4 |
Pig SNP position | 123626354 |
PubMed ID | 21107309 |
---|---|
Journal | Neuropsychopharmacology |
Link | www.ncbi.nlm.nih.gov/pubmed/21107309 |
Study | Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia. |
Disease/Trait | Response to antipsychotic treatment in schizophrenia (working memory) |
Initial sample | 738 European ancestry, African American, and other ancestry cases |
Replication sample | NA |
Region | 1p13.3 |
Chromosome id | chr1 |
Chromosome position | 106889954 |
Reported gene | intergenic |
Mapped gene | LOC105378889 - PRMT6 |
Upstream gene id | 105378889 |
Downstream gene id | 55170 |
SNP gene ids | |
Upstream gene distance | 11652 |
Downstream gene distance | 166691 |
SNP risk allele | rs12726652-? |
SNPs | rs12726652 |
Merged | 0 |
SNP id current | 12726652 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.26 |
P value | 0.0000005 |
Pvalue mlog | 6.30102999566398 |
P value text | (quetiapine) |
Or beta | |
%95 Ci | |
Platform | Affymetrix [492900] |
CNV | N |
Mapped trait | short-term memory |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004335 |
Study accession | GCST000883 |