SNP Detail For rs12726652
1.Mapping Information
Human SNP ID rs12726652
Human chromosome chr1
Human SNP position 106889954
Pig chromosome chr4
Pig SNP position 123626354
2.Annotation Information
PubMed ID21107309
JournalNeuropsychopharmacology
Linkwww.ncbi.nlm.nih.gov/pubmed/21107309
StudyGenome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.
Disease/TraitResponse to antipsychotic treatment in schizophrenia (working memory)
Initial sample738 European ancestry, African American, and other ancestry cases
Replication sampleNA
Region1p13.3
Chromosome idchr1
Chromosome position106889954
Reported geneintergenic
Mapped geneLOC105378889 - PRMT6
Upstream gene id105378889
Downstream gene id55170
SNP gene ids
Upstream gene distance11652
Downstream gene distance166691
SNP risk allelers12726652-?
SNPsrs12726652
Merged0
SNP id current12726652
Contextintergenic_variant
Intergenic1
Allele frequency0.26
P value0.0000005
Pvalue mlog6.30102999566398
P value text(quetiapine)
Or beta
%95 Ci
PlatformAffymetrix [492900]
CNVN
Mapped traitshort-term memory
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004335
Study accessionGCST000883