SNP Detail For rs12725198
1.Mapping Information
Human SNP ID rs12725198
Human chromosome chr1
Human SNP position 15753676
Pig chromosome chr6
Pig SNP position 69379655
2.Annotation Information
PubMed ID23247143
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23247143
StudyAssociation of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.
Disease/TraitCardiac Troponin-T levels
Initial sample9,491 European ancestry individuals, up to 2,053 African American individuals
Replication sampleNA
Region1p36.21
Chromosome idchr1
Chromosome position15753676
Reported geneFBLIM1
Mapped geneTMEM82 - FBLIM1
Upstream gene id388595
Downstream gene id54751
SNP gene ids
Upstream gene distance5879
Downstream gene distance2495
SNP risk allelers12725198-A
SNPsrs12725198
Merged0
SNP id current12725198
Contextupstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text(Dichotomous variable)
Or beta1.85
%95 Ci[1.43-2.39]
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitcardiac troponin T measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005043
Study accessionGCST001776