Human SNP ID | rs12723025 |
---|---|
Human chromosome | chr1 |
Human SNP position | 223789817 |
Pig chromosome | chr10 |
Pig SNP position | 24468855 |
PubMed ID | 26121980 |
---|---|
Journal | BMC Genomics |
Link | www.ncbi.nlm.nih.gov/pubmed/26121980 |
Study | Genome-wide association analysis identified splicing single nucleotide polymorphism in CFLAR predictive of triptolide chemo-sensitivity. |
Disease/Trait | Triptolide cytotoxicity |
Initial sample | 55 European ancestry lymphoblastoid cell lines |
Replication sample | NA |
Region | 1q41 |
Chromosome id | chr1 |
Chromosome position | 223789817 |
Reported gene | TP53BP2 |
Mapped gene | TP53BP2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 7159 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12723025-? |
SNPs | rs12723025 |
Merged | |
SNP id current | 12723025 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | |
Or beta | 0.56 |
%95 Ci | unit increase |
Platform | NR [at least 1978803] (imputed) |
CNV | N |
Mapped trait | response to triptolide, cytotoxicity measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007662, http://www.ebi.ac.uk/efo/EFO_0006952 |
Study accession | GCST003008 |