Human SNP ID | rs12721025 |
---|---|
Human chromosome | chr11 |
Human SNP position | 116835331 |
Pig chromosome | chr9 |
Pig SNP position | 49287987 |
PubMed ID | 23989729 |
---|---|
Journal | JAMA |
Link | www.ncbi.nlm.nih.gov/pubmed/23989729 |
Study | Plasma lipids, genetic variants near APOA1, and the risk of infantile hypertrophic pyloric stenosis. |
Disease/Trait | Infantile hypertrophic pyloric stenosis |
Initial sample | 1,001 European ancestry cases, 2,371 European ancestry controls |
Replication sample | 925 European ancestry cases, 1,621 European ancestry controls, 738 cases, 697 controls |
Region | 11q23.3 |
Chromosome id | chr11 |
Chromosome position | 116835331 |
Reported gene | APOA1 |
Mapped gene | APOC3 - APOA1 |
Upstream gene id | 345 |
Downstream gene id | 335 |
SNP gene ids | |
Upstream gene distance | 2260 |
Downstream gene distance | 420 |
SNP risk allele | rs12721025-A |
SNPs | rs12721025 |
Merged | 0 |
SNP id current | 12721025 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.0569 |
P value | 0.0000000002 |
Pvalue mlog | 9.69897000433601 |
P value text | |
Or beta | 1.59 |
%95 Ci | [1.38-1.83] |
Platform | Illumina [9737928] (imputed) |
CNV | N |
Mapped trait | infantile hypertrophic pyloric stenosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004707 |
Study accession | GCST002145 |