SNP Detail For rs12721025
1.Mapping Information
Human SNP ID rs12721025
Human chromosome chr11
Human SNP position 116835331
Pig chromosome chr9
Pig SNP position 49287987
2.Annotation Information
PubMed ID23989729
JournalJAMA
Linkwww.ncbi.nlm.nih.gov/pubmed/23989729
StudyPlasma lipids, genetic variants near APOA1, and the risk of infantile hypertrophic pyloric stenosis.
Disease/TraitInfantile hypertrophic pyloric stenosis
Initial sample1,001 European ancestry cases, 2,371 European ancestry controls
Replication sample925 European ancestry cases, 1,621 European ancestry controls, 738 cases, 697 controls
Region11q23.3
Chromosome idchr11
Chromosome position116835331
Reported geneAPOA1
Mapped geneAPOC3 - APOA1
Upstream gene id345
Downstream gene id335
SNP gene ids
Upstream gene distance2260
Downstream gene distance420
SNP risk allelers12721025-A
SNPsrs12721025
Merged0
SNP id current12721025
Contextupstream_gene_variant
Intergenic1
Allele frequency0.0569
P value0.0000000002
Pvalue mlog9.69897000433601
P value text
Or beta1.59
%95 Ci[1.38-1.83]
PlatformIllumina [9737928] (imputed)
CNVN
Mapped traitinfantile hypertrophic pyloric stenosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004707
Study accessionGCST002145