Human SNP ID | rs12719740 |
---|---|
Human chromosome | chr15 |
Human SNP position | 98529676 |
Pig chromosome | chr1 |
Pig SNP position | 153416231 |
PubMed ID | 22354554 |
---|---|
Journal | Arthritis Rheum |
Link | www.ncbi.nlm.nih.gov/pubmed/22354554 |
Study | Genome-wide association analysis of juvenile idiopathic arthritis identifies a new susceptibility locus at chromosomal region 3q13. |
Disease/Trait | Arthritis (juvenile idiopathic) |
Initial sample | 814 European ancestry cases, 658 European ancestry controls, 2,400 controls |
Replication sample | 1,744 European ancestry cases, 7,010 European ancestry controls |
Region | 15q26.3 |
Chromosome id | chr15 |
Chromosome position | 98529676 |
Reported gene | FAM169B, IGF1R |
Mapped gene | LOC105371012 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105371012 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12719740-T |
SNPs | rs12719740 |
Merged | 0 |
SNP id current | 12719740 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.18 |
P value | 0.0000007 |
Pvalue mlog | 6.15490195998574 |
P value text | |
Or beta | 1.15 |
%95 Ci | [1.06-1.25] |
Platform | Affymetrix [561137] |
CNV | N |
Mapped trait | chronic childhood arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002609 |
Study accession | GCST001417 |