SNP Detail For rs12719740
1.Mapping Information
Human SNP ID rs12719740
Human chromosome chr15
Human SNP position 98529676
Pig chromosome chr1
Pig SNP position 153416231
2.Annotation Information
PubMed ID22354554
JournalArthritis Rheum
Linkwww.ncbi.nlm.nih.gov/pubmed/22354554
StudyGenome-wide association analysis of juvenile idiopathic arthritis identifies a new susceptibility locus at chromosomal region 3q13.
Disease/TraitArthritis (juvenile idiopathic)
Initial sample814 European ancestry cases, 658 European ancestry controls, 2,400 controls
Replication sample1,744 European ancestry cases, 7,010 European ancestry controls
Region15q26.3
Chromosome idchr15
Chromosome position98529676
Reported geneFAM169B, IGF1R
Mapped geneLOC105371012
Upstream gene id
Downstream gene id
SNP gene ids105371012
Upstream gene distance
Downstream gene distance
SNP risk allelers12719740-T
SNPsrs12719740
Merged0
SNP id current12719740
Contextintron_variant
Intergenic0
Allele frequency0.18
P value0.0000007
Pvalue mlog6.15490195998574
P value text
Or beta1.15
%95 Ci[1.06-1.25]
PlatformAffymetrix [561137]
CNVN
Mapped traitchronic childhood arthritis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002609
Study accessionGCST001417