SNP Detail For rs12710696
1.Mapping Information
Human SNP ID rs12710696
Human chromosome chr2
Human SNP position 19121042
Pig chromosome chr3
Pig SNP position 127034001
2.Annotation Information
PubMed ID23535733
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23535733
StudyGenome-wide association studies identify four ER negative-specific breast cancer risk loci.
Disease/TraitBreast cancer
Initial sample4,193 European ancestry cases, 35,194 European ancestry controls
Replication sample6,514 European ancestry cases, 41,455 European ancestry controls
Region2p24.1
Chromosome idchr2
Chromosome position19121042
Reported geneintergenic
Mapped geneLOC105373457 - MIR4757
Upstream gene id105373457
Downstream gene id100616307
SNP gene ids
Upstream gene distance20566
Downstream gene distance227387
SNP risk allelers12710696-?
SNPsrs12710696
Merged0
SNP id current12710696
Contextintron_variant
Intergenic1
Allele frequency0.36
P value0.00000005
Pvalue mlog7.30102999566398
P value text
Or beta1.1
%95 Ci[1.06-1.13]
PlatformIllumina [NR]
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST001930