Human SNP ID | rs12710696 |
---|---|
Human chromosome | chr2 |
Human SNP position | 19121042 |
Pig chromosome | chr3 |
Pig SNP position | 127034001 |
PubMed ID | 23535733 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23535733 |
Study | Genome-wide association studies identify four ER negative-specific breast cancer risk loci. |
Disease/Trait | Breast cancer |
Initial sample | 4,193 European ancestry cases, 35,194 European ancestry controls |
Replication sample | 6,514 European ancestry cases, 41,455 European ancestry controls |
Region | 2p24.1 |
Chromosome id | chr2 |
Chromosome position | 19121042 |
Reported gene | intergenic |
Mapped gene | LOC105373457 - MIR4757 |
Upstream gene id | 105373457 |
Downstream gene id | 100616307 |
SNP gene ids | |
Upstream gene distance | 20566 |
Downstream gene distance | 227387 |
SNP risk allele | rs12710696-? |
SNPs | rs12710696 |
Merged | 0 |
SNP id current | 12710696 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.36 |
P value | 0.00000005 |
Pvalue mlog | 7.30102999566398 |
P value text | |
Or beta | 1.1 |
%95 Ci | [1.06-1.13] |
Platform | Illumina [NR] |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST001930 |