SNP Detail For rs12702919
1.Mapping Information
Human SNP ID rs12702919
Human chromosome chr7
Human SNP position 9510942
Pig chromosome chr9
Pig SNP position 87461234
2.Annotation Information
PubMed ID24324551
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24324551
StudyGenome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
Disease/TraitPR interval in Tripanosoma cruzi seropositivity
Initial sample580 Brazilian ancestry individuals
Replication sampleNA
Region7p21.3
Chromosome idchr7
Chromosome position9510942
Reported geneNR
Mapped geneRPL9P19 - GAPDHP68
Upstream gene id100129634
Downstream gene id100132601
SNP gene ids
Upstream gene distance571488
Downstream gene distance103966
SNP risk allelers12702919-?
SNPsrs12702919
Merged0
SNP id current12702919
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta
%95 Ci
PlatformAffymetrix [5486770] (imputed)
CNVN
Mapped traitPR interval, Trypanosoma cruzi seropositivity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004462, http://www.ebi.ac.uk/efo/EFO_0005530
Study accessionGCST002279