Human SNP ID | rs12700667 |
---|---|
Human chromosome | chr7 |
Human SNP position | 25862019 |
Pig chromosome | chr18 |
Pig SNP position | 51300325 |
PubMed ID | 21151130 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21151130 |
Study | Genome-wide association study identifies a locus at 7p15.2 associated with endometriosis. |
Disease/Trait | Endometriosis |
Initial sample | 3,194 European ancestry cases, 7,060 European ancestry controls |
Replication sample | 2,392 European ancestry cases, 2,271 European ancestry controls |
Region | 7p15.2 |
Chromosome id | chr7 |
Chromosome position | 25862019 |
Reported gene | intergenic |
Mapped gene | LOC100506236 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100506236 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12700667-A |
SNPs | rs12700667 |
Merged | 0 |
SNP id current | 12700667 |
Context | regulatory_region_variant |
Intergenic | 0 |
Allele frequency | 0.74 |
P value | 0.000000001 |
Pvalue mlog | 9 |
P value text | |
Or beta | 1.2 |
%95 Ci | [1.13-1.27] |
Platform | Illumina [504723] |
CNV | N |
Mapped trait | endometriosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001065 |
Study accession | GCST000916 |
PubMed ID | 23104006 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23104006 |
Study | Genome-wide association meta-analysis identifies new endometriosis risk loci. |
Disease/Trait | Endometriosis |
Initial sample | 3,181 European ancestry cases, 8,075 European ancestry controls, 1,423 Japanese ancestry cases, 1,318 Japanese ancestry controls |
Replication sample | 1,044 Japanese ancestry, 4,017 Japanese ancestry controls |
Region | 7p15.2 |
Chromosome id | chr7 |
Chromosome position | 25862019 |
Reported gene | intergenic |
Mapped gene | LOC100506236 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100506236 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12700667-A |
SNPs | rs12700667 |
Merged | 0 |
SNP id current | 12700667 |
Context | regulatory_region_variant |
Intergenic | 0 |
Allele frequency | 0.744 |
P value | 0.000000004 |
Pvalue mlog | 8.39794000867203 |
P value text | |
Or beta | 1.18 |
%95 Ci | [1.11-1.25] |
Platform | Illumina [407632] |
CNV | N |
Mapped trait | endometriosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001065 |
Study accession | GCST001720 |