Human SNP ID | rs12699131 |
---|---|
Human chromosome | chr7 |
Human SNP position | 72286331 |
Pig chromosome | chr3 |
Pig SNP position | 16071816 |
PubMed ID | 21926974 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21926974 |
Study | Genome-wide association study identifies five new schizophrenia loci. |
Disease/Trait | Schizophrenia |
Initial sample | 9,394 European ancestry cases, 12,462 European ancestry controls |
Replication sample | 8,442 European ancestry cases, 21,397 European ancestry controls |
Region | 7q11.22 |
Chromosome id | chr7 |
Chromosome position | 72286331 |
Reported gene | NR |
Mapped gene | CALN1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 83698 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12699131-? |
SNPs | rs12699131 |
Merged | 0 |
SNP id current | 12699131 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.08 |
%95 Ci | [1.04-1.11] |
Platform | Affymetrix, Illumina [1252901] (imputed) |
CNV | N |
Mapped trait | schizophrenia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000692 |
Study accession | GCST001242 |