SNP Detail For rs12699131
1.Mapping Information
Human SNP ID rs12699131
Human chromosome chr7
Human SNP position 72286331
Pig chromosome chr3
Pig SNP position 16071816
2.Annotation Information
PubMed ID21926974
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21926974
StudyGenome-wide association study identifies five new schizophrenia loci.
Disease/TraitSchizophrenia
Initial sample9,394 European ancestry cases, 12,462 European ancestry controls
Replication sample8,442 European ancestry cases, 21,397 European ancestry controls
Region7q11.22
Chromosome idchr7
Chromosome position72286331
Reported geneNR
Mapped geneCALN1
Upstream gene id
Downstream gene id
SNP gene ids83698
Upstream gene distance
Downstream gene distance
SNP risk allelers12699131-?
SNPsrs12699131
Merged0
SNP id current12699131
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.08
%95 Ci[1.04-1.11]
PlatformAffymetrix, Illumina [1252901] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST001242