Human SNP ID | rs12696304 |
---|---|
Human chromosome | chr3 |
Human SNP position | 169763483 |
Pig chromosome | chr13 |
Pig SNP position | 117008753 |
PubMed ID | 21573004 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/21573004 |
Study | Genome-wide association study of relative telomere length. |
Disease/Trait | Telomere length |
Initial sample | 3,554 European ancestry individuals |
Replication sample | 2,460 European ancestry individuals |
Region | 3q26.2 |
Chromosome id | chr3 |
Chromosome position | 169763483 |
Reported gene | TERC |
Mapped gene | SDHDP3 - TERC |
Upstream gene id | 29771 |
Downstream gene id | 7012 |
SNP gene ids | |
Upstream gene distance | 52905 |
Downstream gene distance | 1127 |
SNP risk allele | rs12696304-G |
SNPs | rs12696304 |
Merged | 0 |
SNP id current | 12696304 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.27 |
P value | 0.00000000000002 |
Pvalue mlog | 13.698970004336 |
P value text | |
Or beta | 0.03 |
%95 Ci | [0.02-0.04] unit decrease |
Platform | Illumina [2608509] (imputed) |
CNV | N |
Mapped trait | telomere length |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004505 |
Study accession | GCST001068 |
PubMed ID | 20139977 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20139977 |
Study | Common variants near TERC are associated with mean telomere length. |
Disease/Trait | Telomere length |
Initial sample | 2,917 European ancestry individuals |
Replication sample | 9,492 European ancestry individuals |
Region | 3q26.2 |
Chromosome id | chr3 |
Chromosome position | 169763483 |
Reported gene | TERC |
Mapped gene | SDHDP3 - TERC |
Upstream gene id | 29771 |
Downstream gene id | 7012 |
SNP gene ids | |
Upstream gene distance | 52905 |
Downstream gene distance | 1127 |
SNP risk allele | rs12696304-G |
SNPs | rs12696304 |
Merged | 0 |
SNP id current | 12696304 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.3 |
P value | 0.00000000000004 |
Pvalue mlog | 13.397940008672 |
P value text | |
Or beta | 0.11 |
%95 Ci | [0.08-0.14] unit decrease |
Platform | Affymetrix [405649] |
CNV | N |
Mapped trait | telomere length |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004505 |
Study accession | GCST000586 |
PubMed ID | 26237428 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26237428 |
Study | Genome-wide meta-analysis identifies five new susceptibility loci for cutaneous malignant melanoma. |
Disease/Trait | Cutaneous malignant melanoma |
Initial sample | 12,874 European ancestry cases, 23,203 European ancestry controls |
Replication sample | 785 European ancestry cases, 791 European ancestry controls, 2,331 cases, 2,415 controls |
Region | 3q26.2 |
Chromosome id | chr3 |
Chromosome position | 169763483 |
Reported gene | TERC |
Mapped gene | SDHDP3 - TERC |
Upstream gene id | 29771 |
Downstream gene id | 7012 |
SNP gene ids | |
Upstream gene distance | 52905 |
Downstream gene distance | 1127 |
SNP risk allele | rs12696304-G |
SNPs | rs12696304 |
Merged | 0 |
SNP id current | 12696304 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.27 |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | |
Or beta | 0.092 |
%95 Ci | [NR] unit decrease |
Platform | Affymetrix, Illumina [at least 1569314] (imputed) |
CNV | N |
Mapped trait | cutaneous melanoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000389 |
Study accession | GCST003061 |