SNP Detail For rs1268789
1.Mapping Information
Human SNP ID rs1268789
Human chromosome chr4
Human SNP position 78359539
Pig chromosome chr8
Pig SNP position 78039662
2.Annotation Information
PubMed ID19896111
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19896111
StudyCommon variants in the trichohyalin gene are associated with straight hair in Europeans.
Disease/TraitHair morphology
Initial sample4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals
Replication sampleNA
Region4q21.21
Chromosome idchr4
Chromosome position78359539
Reported geneFRAS1
Mapped geneFRAS1
Upstream gene id
Downstream gene id
SNP gene ids80144
Upstream gene distance
Downstream gene distance
SNP risk allelers1268789-T
SNPsrs1268789
Merged0
SNP id current1268789
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000007
Pvalue mlog7.15490195998574
P value text
Or beta
%95 Ci
PlatformIllumina [~ 1000000] (imputed)
CNVN
Mapped traithair morphology
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005038
Study accessionGCST000519