Human SNP ID | rs12682344 |
---|---|
Human chromosome | chr8 |
Human SNP position | 127094539 |
Pig chromosome | chr4 |
Pig SNP position | 13349864 |
PubMed ID | 24753544 |
---|---|
Journal | Cancer Epidemiol Biomarkers Prev |
Link | www.ncbi.nlm.nih.gov/pubmed/24753544 |
Study | Genetic variation in prostate-specific antigen-detected prostate cancer and the effect of control selection on genetic association studies. |
Disease/Trait | Prostate cancer |
Initial sample | 1,146 European ancestry cases, 1,804 European ancestry controls |
Replication sample | 1,854 European ancestry cases, 1,437 European ancestry controls |
Region | 8q24.21 |
Chromosome id | chr8 |
Chromosome position | 127094539 |
Reported gene | SRRM1P1, POU5F1B |
Mapped gene | PRNCR1 - LOC105375752 |
Upstream gene id | 101867536 |
Downstream gene id | 105375752 |
SNP gene ids | |
Upstream gene distance | 1944 |
Downstream gene distance | 45545 |
SNP risk allele | rs12682344-G |
SNPs | rs12682344 |
Merged | 0 |
SNP id current | 12682344 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.000000000005 |
Pvalue mlog | 11.3010299956639 |
P value text | |
Or beta | 0.67 |
%95 Ci | [0.48-0.86] unit increase |
Platform | Illumina [514432] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST002421 |