SNP Detail For rs12682344
1.Mapping Information
Human SNP ID rs12682344
Human chromosome chr8
Human SNP position 127094539
Pig chromosome chr4
Pig SNP position 13349864
2.Annotation Information
PubMed ID24753544
JournalCancer Epidemiol Biomarkers Prev
Linkwww.ncbi.nlm.nih.gov/pubmed/24753544
StudyGenetic variation in prostate-specific antigen-detected prostate cancer and the effect of control selection on genetic association studies.
Disease/TraitProstate cancer
Initial sample1,146 European ancestry cases, 1,804 European ancestry controls
Replication sample1,854 European ancestry cases, 1,437 European ancestry controls
Region8q24.21
Chromosome idchr8
Chromosome position127094539
Reported geneSRRM1P1, POU5F1B
Mapped genePRNCR1 - LOC105375752
Upstream gene id101867536
Downstream gene id105375752
SNP gene ids
Upstream gene distance1944
Downstream gene distance45545
SNP risk allelers12682344-G
SNPsrs12682344
Merged0
SNP id current12682344
Contextdownstream_gene_variant
Intergenic1
Allele frequency
P value0.000000000005
Pvalue mlog11.3010299956639
P value text
Or beta0.67
%95 Ci[0.48-0.86] unit increase
PlatformIllumina [514432] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST002421