Human SNP ID | rs12679857 |
---|---|
Human chromosome | chr8 |
Human SNP position | 118965098 |
Pig chromosome | chr4 |
Pig SNP position | 20904280 |
PubMed ID | 21980299 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21980299 |
Study | A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci. |
Disease/Trait | Type 1 diabetes |
Initial sample | 9,934 European ancestry cases, 16,956 European ancestry controls |
Replication sample | 1,120 European ancestry affected trios |
Region | 8q24.12 |
Chromosome id | chr8 |
Chromosome position | 118965098 |
Reported gene | TNFRSF11B |
Mapped gene | COLEC10 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10584 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12679857-? |
SNPs | rs12679857 |
Merged | 0 |
SNP id current | 12679857 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.69 |
P value | 0.0000004 |
Pvalue mlog | 6.39794000867203 |
P value text | |
Or beta | 1.2 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [~ 2540000] (imputed) |
CNV | N |
Mapped trait | type I diabetes mellitus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001359 |
Study accession | GCST001255 |