SNP Detail For rs12679857
1.Mapping Information
Human SNP ID rs12679857
Human chromosome chr8
Human SNP position 118965098
Pig chromosome chr4
Pig SNP position 20904280
2.Annotation Information
PubMed ID21980299
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21980299
StudyA genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci.
Disease/TraitType 1 diabetes
Initial sample9,934 European ancestry cases, 16,956 European ancestry controls
Replication sample1,120 European ancestry affected trios
Region8q24.12
Chromosome idchr8
Chromosome position118965098
Reported geneTNFRSF11B
Mapped geneCOLEC10
Upstream gene id
Downstream gene id
SNP gene ids10584
Upstream gene distance
Downstream gene distance
SNP risk allelers12679857-?
SNPsrs12679857
Merged0
SNP id current12679857
Contextintergenic_variant
Intergenic0
Allele frequency0.69
P value0.0000004
Pvalue mlog6.39794000867203
P value text
Or beta1.2
%95 Ci[NR]
PlatformAffymetrix, Illumina [~ 2540000] (imputed)
CNVN
Mapped traittype I diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001359
Study accessionGCST001255