Human SNP ID | rs12677663 |
---|---|
Human chromosome | chr8 |
Human SNP position | 73095112 |
Pig chromosome | chr4 |
Pig SNP position | 68484561 |
PubMed ID | 22412388 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22412388 |
Study | A genome-wide scan of Ashkenazi Jewish Crohn__s disease suggests novel susceptibility loci. |
Disease/Trait | Crohn__s disease |
Initial sample | 737 Ashkenazi Jewish cases, 2,257 Ashkenazi Jewish controls |
Replication sample | 971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls |
Region | 8q21.11 |
Chromosome id | chr8 |
Chromosome position | 73095112 |
Reported gene | C8orf84, TERF1, RPL7, RDH10, KCNB2 |
Mapped gene | SBSPON - LOC105375901 |
Upstream gene id | 157869 |
Downstream gene id | 105375901 |
SNP gene ids | |
Upstream gene distance | 1840 |
Downstream gene distance | 129299 |
SNP risk allele | rs12677663-T |
SNPs | rs12677663 |
Merged | 0 |
SNP id current | 12677663 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.659 |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | |
Or beta | 1.15 |
%95 Ci | [1.04-1.28] |
Platform | Affymetrix, Illumina [1060934] (imputed) |
CNV | N |
Mapped trait | Crohn__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000384 |
Study accession | GCST001438 |