SNP Detail For rs12677663
1.Mapping Information
Human SNP ID rs12677663
Human chromosome chr8
Human SNP position 73095112
Pig chromosome chr4
Pig SNP position 68484561
2.Annotation Information
PubMed ID22412388
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22412388
StudyA genome-wide scan of Ashkenazi Jewish Crohn__s disease suggests novel susceptibility loci.
Disease/TraitCrohn__s disease
Initial sample737 Ashkenazi Jewish cases, 2,257 Ashkenazi Jewish controls
Replication sample971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls
Region8q21.11
Chromosome idchr8
Chromosome position73095112
Reported geneC8orf84, TERF1, RPL7, RDH10, KCNB2
Mapped geneSBSPON - LOC105375901
Upstream gene id157869
Downstream gene id105375901
SNP gene ids
Upstream gene distance1840
Downstream gene distance129299
SNP risk allelers12677663-T
SNPsrs12677663
Merged0
SNP id current12677663
Contextintron_variant
Intergenic1
Allele frequency0.659
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta1.15
%95 Ci[1.04-1.28]
PlatformAffymetrix, Illumina [1060934] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST001438