Human SNP ID | rs12676170 |
---|---|
Human chromosome | chr8 |
Human SNP position | 15339908 |
Pig chromosome | chr17 |
Pig SNP position | 3097824 |
PubMed ID | 23322567 |
---|---|
Journal | Invest Ophthalmol Vis Sci |
Link | www.ncbi.nlm.nih.gov/pubmed/23322567 |
Study | Identification of a candidate gene for astigmatism. |
Disease/Trait | Corneal astigmatism |
Initial sample | 22,100 European ancestry individuals |
Replication sample | |
Region | 8p22 |
Chromosome id | chr8 |
Chromosome position | 15339908 |
Reported gene | NR |
Mapped gene | SGCZ - TUSC3 |
Upstream gene id | 137868 |
Downstream gene id | 7991 |
SNP gene ids | |
Upstream gene distance | 101625 |
Downstream gene distance | 200179 |
SNP risk allele | rs12676170-A |
SNPs | rs12676170 |
Merged | 0 |
SNP id current | 12676170 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | |
Or beta | 0.054 |
%95 Ci | [NR] unit decrease |
Platform | Affymetrix, Illumina [2800000] (imputed) |
CNV | N |
Mapped trait | Astigmatism |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0000483 |
Study accession | GCST001819 |