SNP Detail For rs12676170
1.Mapping Information
Human SNP ID rs12676170
Human chromosome chr8
Human SNP position 15339908
Pig chromosome chr17
Pig SNP position 3097824
2.Annotation Information
PubMed ID23322567
JournalInvest Ophthalmol Vis Sci
Linkwww.ncbi.nlm.nih.gov/pubmed/23322567
StudyIdentification of a candidate gene for astigmatism.
Disease/TraitCorneal astigmatism
Initial sample22,100 European ancestry individuals
Replication sample
Region8p22
Chromosome idchr8
Chromosome position15339908
Reported geneNR
Mapped geneSGCZ - TUSC3
Upstream gene id137868
Downstream gene id7991
SNP gene ids
Upstream gene distance101625
Downstream gene distance200179
SNP risk allelers12676170-A
SNPsrs12676170
Merged0
SNP id current12676170
Contextregulatory_region_variant
Intergenic1
Allele frequency
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta0.054
%95 Ci[NR] unit decrease
PlatformAffymetrix, Illumina [2800000] (imputed)
CNVN
Mapped traitAstigmatism
Mapped trait URIhttp://purl.obolibrary.org/obo/HP_0000483
Study accessionGCST001819