Human SNP ID | rs12669076 |
---|---|
Human chromosome | chr7 |
Human SNP position | 96785743 |
Pig chromosome | chr9 |
Pig SNP position | 84054272 |
PubMed ID | 20694011 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20694011 |
Study | Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency. |
Disease/Trait | Immunoglobulin A |
Initial sample | 430 European ancestry cases, 1,090 European ancestry controls |
Replication sample | 342 European ancestry cases, 886 European ancestry controls |
Region | 7q21.3 |
Chromosome id | chr7 |
Chromosome position | 96785743 |
Reported gene | SHFM1 |
Mapped gene | SHFM1 - LOC105375414 |
Upstream gene id | 7979 |
Downstream gene id | 105375414 |
SNP gene ids | |
Upstream gene distance | 75852 |
Downstream gene distance | 1080 |
SNP risk allele | rs12669076-? |
SNPs | rs12669076 |
Merged | 0 |
SNP id current | 12669076 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.66 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.35 |
%95 Ci | [1.18-1.54] |
Platform | Illumina [2057134] (imputed) |
CNV | N |
Mapped trait | protein measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004747 |
Study accession | GCST000763 |