SNP Detail For rs12669076
1.Mapping Information
Human SNP ID rs12669076
Human chromosome chr7
Human SNP position 96785743
Pig chromosome chr9
Pig SNP position 84054272
2.Annotation Information
PubMed ID20694011
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20694011
StudyAssociation of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.
Disease/TraitImmunoglobulin A
Initial sample430 European ancestry cases, 1,090 European ancestry controls
Replication sample342 European ancestry cases, 886 European ancestry controls
Region7q21.3
Chromosome idchr7
Chromosome position96785743
Reported geneSHFM1
Mapped geneSHFM1 - LOC105375414
Upstream gene id7979
Downstream gene id105375414
SNP gene ids
Upstream gene distance75852
Downstream gene distance1080
SNP risk allelers12669076-?
SNPsrs12669076
Merged0
SNP id current12669076
Contextintergenic_variant
Intergenic1
Allele frequency0.66
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.35
%95 Ci[1.18-1.54]
PlatformIllumina [2057134] (imputed)
CNVN
Mapped traitprotein measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004747
Study accessionGCST000763