SNP Detail For rs12664111
1.Mapping Information
Human SNP ID rs12664111
Human chromosome chr6
Human SNP position 139818678
Pig chromosome chr1
Pig SNP position 27868034
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region6q24.1
Chromosome idchr6
Chromosome position139818678
Reported geneNR
Mapped geneLOC100132735
Upstream gene id
Downstream gene id
SNP gene ids100132735
Upstream gene distance
Downstream gene distance
SNP risk allelers12664111-G
SNPsrs12664111
Merged0
SNP id current12664111
Contextintergenic_variant
Intergenic0
Allele frequency0.0919615409617097
P value0.000006
Pvalue mlog5.22184874961635
P value text(IGP68)
Or beta0.2425
%95 Ci[0.14-0.35] unit decrease
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848