Human SNP ID | rs12656502 |
---|---|
Human chromosome | chr5 |
Human SNP position | 108646046 |
Pig chromosome | chr2 |
Pig SNP position | 118143474 |
PubMed ID | 24535457 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/24535457 |
Study | A genome-wide association meta-analysis of plasma Aβ peptides concentrations in the elderly. |
Disease/Trait | Plasma amyloid beta peptide concentrations (ABx-42) |
Initial sample | 3,528 European ancestry individuals |
Replication sample | NA |
Region | 5q21.3 |
Chromosome id | chr5 |
Chromosome position | 108646046 |
Reported gene | intergenic |
Mapped gene | RPS20P3 - LINC01023 |
Upstream gene id | 6225 |
Downstream gene id | 100652853 |
SNP gene ids | |
Upstream gene distance | 52043 |
Downstream gene distance | 81779 |
SNP risk allele | rs12656502-A |
SNPs | rs12656502 |
Merged | 0 |
SNP id current | 12656502 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.228 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 0.08 |
%95 Ci | [0.041-0.119] unit increase |
Platform | Illumina [2316178] (imputed) |
CNV | N |
Mapped trait | plasma beta-amyloid 1-42 measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005660 |
Study accession | GCST002359 |