SNP Detail For rs12656502
1.Mapping Information
Human SNP ID rs12656502
Human chromosome chr5
Human SNP position 108646046
Pig chromosome chr2
Pig SNP position 118143474
2.Annotation Information
PubMed ID24535457
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/24535457
StudyA genome-wide association meta-analysis of plasma Aβ peptides concentrations in the elderly.
Disease/TraitPlasma amyloid beta peptide concentrations (ABx-42)
Initial sample3,528 European ancestry individuals
Replication sampleNA
Region5q21.3
Chromosome idchr5
Chromosome position108646046
Reported geneintergenic
Mapped geneRPS20P3 - LINC01023
Upstream gene id6225
Downstream gene id100652853
SNP gene ids
Upstream gene distance52043
Downstream gene distance81779
SNP risk allelers12656502-A
SNPsrs12656502
Merged0
SNP id current12656502
Contextintergenic_variant
Intergenic1
Allele frequency0.228
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta0.08
%95 Ci[0.041-0.119] unit increase
PlatformIllumina [2316178] (imputed)
CNVN
Mapped traitplasma beta-amyloid 1-42 measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005660
Study accessionGCST002359