SNP Detail For rs12653117
1.Mapping Information
Human SNP ID rs12653117
Human chromosome chr5
Human SNP position 9386473
Pig chromosome chr16
Pig SNP position 78907723
2.Annotation Information
PubMed ID26562150
JournalMol Med
Linkwww.ncbi.nlm.nih.gov/pubmed/26562150
StudyGenome-wide Association Study of Late-Onset Myasthenia Gravis: Confirmation of TNFRSF11A, and Identification of ZBTB10 and Three Distinct HLA Associations.
Disease/TraitLate-onset myasthenia gravis
Initial sample532 European ancestry cases, 2,128 European ancestry controls
Replication sampleNA
Region5p15.31
Chromosome idchr5
Chromosome position9386473
Reported geneSEMA5A
Mapped geneSEMA5A
Upstream gene id
Downstream gene id
SNP gene ids9037
Upstream gene distance
Downstream gene distance
SNP risk allelers12653117-T
SNPsrs12653117
Merged0
SNP id current12653117
Contextintron_variant
Intergenic0
Allele frequency0.08
P value0.0000005
Pvalue mlog6.30102999566398
P value text
Or beta1.76
%95 Ci[1.42-2.17]
PlatformIllumina [6175472] (imputed)
CNVN
Mapped traitlate-onset myasthenia gravis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_1001490
Study accessionGCST003251