Human SNP ID | rs12652777 |
---|---|
Human chromosome | chr5 |
Human SNP position | 156348065 |
Pig chromosome | chr16 |
Pig SNP position | 72733669 |
PubMed ID | 26198764 |
---|---|
Journal | Am J Med Genet B Neuropsychiatr Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26198764 |
Study | Genome-wide association study of schizophrenia in Ashkenazi Jews. |
Disease/Trait | Schizophrenia |
Initial sample | 592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls |
Replication sample | NA |
Region | 5q33.3 |
Chromosome id | chr5 |
Chromosome position | 156348065 |
Reported gene | NR |
Mapped gene | LOC105377674, SGCD |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105377674, 6444 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12652777-T |
SNPs | rs12652777 |
Merged | |
SNP id current | 12652777 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | |
Or beta | 1.05 |
%95 Ci | [NR] |
Platform | Illumina [7158791] (imputed) |
CNV | N |
Mapped trait | schizophrenia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000692 |
Study accession | GCST003048 |