SNP Detail For rs12652777
1.Mapping Information
Human SNP ID rs12652777
Human chromosome chr5
Human SNP position 156348065
Pig chromosome chr16
Pig SNP position 72733669
2.Annotation Information
PubMed ID26198764
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26198764
StudyGenome-wide association study of schizophrenia in Ashkenazi Jews.
Disease/TraitSchizophrenia
Initial sample592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls
Replication sampleNA
Region5q33.3
Chromosome idchr5
Chromosome position156348065
Reported geneNR
Mapped geneLOC105377674, SGCD
Upstream gene id
Downstream gene id
SNP gene ids105377674, 6444
Upstream gene distance
Downstream gene distance
SNP risk allelers12652777-T
SNPsrs12652777
Merged
SNP id current12652777
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta1.05
%95 Ci[NR]
PlatformIllumina [7158791] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST003048