Human SNP ID | rs1265112 |
---|---|
Human chromosome | chr6 |
Human SNP position | 31150242 |
Pig chromosome | chr7 |
Pig SNP position | 27283061 |
PubMed ID | 21810746 |
---|---|
Journal | Clin Infect Dis |
Link | www.ncbi.nlm.nih.gov/pubmed/21810746 |
Study | Genome-wide association study identifies variations in 6p21.3 associated with nevirapine-induced rash. |
Disease/Trait | Nevirapine-induced rash |
Initial sample | 72 Thai ancestry nevirapine-induced rash HIV cases, 77 Thai ancestry nevirapine-tolerant rash HIV cases |
Replication sample | 88 Thai ancestry nevirapine-induced rash HIV cases, 145 Thai ancestry nevirapine-tolerant HIV cases |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 31150242 |
Reported gene | CCHCR1 |
Mapped gene | CCHCR1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 54535 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1265112-G |
SNPs | rs1265112 |
Merged | 0 |
SNP id current | 1265112 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.06 |
P value | 0.00000001 |
Pvalue mlog | 8 |
P value text | |
Or beta | 4.36 |
%95 Ci | [2.58-7.36] |
Platform | Illumina [499730] |
CNV | N |
Mapped trait | response to reverse transcriptase inhibitor |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0061479 |
Study accession | GCST001186 |