SNP Detail For rs1265112
1.Mapping Information
Human SNP ID rs1265112
Human chromosome chr6
Human SNP position 31150242
Pig chromosome chr7
Pig SNP position 27283061
2.Annotation Information
PubMed ID21810746
JournalClin Infect Dis
Linkwww.ncbi.nlm.nih.gov/pubmed/21810746
StudyGenome-wide association study identifies variations in 6p21.3 associated with nevirapine-induced rash.
Disease/TraitNevirapine-induced rash
Initial sample72 Thai ancestry nevirapine-induced rash HIV cases, 77 Thai ancestry nevirapine-tolerant rash HIV cases
Replication sample88 Thai ancestry nevirapine-induced rash HIV cases, 145 Thai ancestry nevirapine-tolerant HIV cases
Region6p21.33
Chromosome idchr6
Chromosome position31150242
Reported geneCCHCR1
Mapped geneCCHCR1
Upstream gene id
Downstream gene id
SNP gene ids54535
Upstream gene distance
Downstream gene distance
SNP risk allelers1265112-G
SNPsrs1265112
Merged0
SNP id current1265112
Contextintron_variant
Intergenic0
Allele frequency0.06
P value0.00000001
Pvalue mlog8
P value text
Or beta4.36
%95 Ci[2.58-7.36]
PlatformIllumina [499730]
CNVN
Mapped traitresponse to reverse transcriptase inhibitor
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0061479
Study accessionGCST001186