SNP Detail For rs12646107
1.Mapping Information
Human SNP ID rs12646107
Human chromosome chr4
Human SNP position 173594531
Pig chromosome chr14
Pig SNP position 17595892
2.Annotation Information
PubMed ID22952603
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/22952603
StudyGenome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).
Disease/TraitResponse to amphetamines
Initial sample1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals
Replication sampleNA
Region4q34.1
Chromosome idchr4
Chromosome position173594531
Reported geneintergenic
Mapped geneLOC105377542 - RANP6
Upstream gene id105377542
Downstream gene id100128266
SNP gene ids
Upstream gene distance11363
Downstream gene distance39000
SNP risk allelers12646107-?
SNPsrs12646107
Merged0
SNP id current12646107
Contextnon_coding_transcript_exon_variant
Intergenic1
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text(SF8)
Or beta
%95 Ci
PlatformAffymetrix [5476100] (imputed)
CNVN
Mapped traitresponse to drug
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0042493
Study accessionGCST001651