SNP Detail For rs12641856
1.Mapping Information
Human SNP ID rs12641856
Human chromosome chr4
Human SNP position 181688712
Pig chromosome chr15
Pig SNP position 49848600
2.Annotation Information
PubMed ID23551011
JournalAnn Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23551011
StudyGenome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.
Disease/TraitPreeclampsia
Initial sample21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls
Replication sampleNA
Region4q34.3
Chromosome idchr4
Chromosome position181688712
Reported geneMGC45800
Mapped geneLOC105377574
Upstream gene id
Downstream gene id
SNP gene ids105377574
Upstream gene distance
Downstream gene distance
SNP risk allelers12641856-?
SNPsrs12641856
Merged0
SNP id current12641856
Contextregulatory_region_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text(Afro-Caribbean)
Or beta15.19
%95 Ci[4.98-46.35]
PlatformIllumina [2485249] (imputed)
CNVN
Mapped traitpreeclampsia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000668
Study accessionGCST001949