Human SNP ID | rs12638862 |
---|---|
Human chromosome | chr3 |
Human SNP position | 169759718 |
Pig chromosome | chr13 |
Pig SNP position | 117004072 |
PubMed ID | 23502783 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23502783 |
Study | The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma. |
Disease/Trait | Multiple myeloma (IgH translocation) |
Initial sample | up to 1,660 European ancestry cases, 7,306 European ancestry controls |
Replication sample | |
Region | 3q26.2 |
Chromosome id | chr3 |
Chromosome position | 169759718 |
Reported gene | NR |
Mapped gene | SDHDP3 - TERC |
Upstream gene id | 29771 |
Downstream gene id | 7012 |
SNP gene ids | |
Upstream gene distance | 49140 |
Downstream gene distance | 4892 |
SNP risk allele | rs12638862-A |
SNPs | rs12638862 |
Merged | 0 |
SNP id current | 12638862 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.74 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (Any IgH translocation vs. controls) |
Or beta | 1.37 |
%95 Ci | [1.20-1.56] |
Platform | Illumina [414804] (imputed) |
CNV | N |
Mapped trait | multiple myeloma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001378 |
Study accession | GCST001906 |