SNP Detail For rs12638862
1.Mapping Information
Human SNP ID rs12638862
Human chromosome chr3
Human SNP position 169759718
Pig chromosome chr13
Pig SNP position 117004072
2.Annotation Information
PubMed ID23502783
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23502783
StudyThe CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.
Disease/TraitMultiple myeloma (IgH translocation)
Initial sampleup to 1,660 European ancestry cases, 7,306 European ancestry controls
Replication sample
Region3q26.2
Chromosome idchr3
Chromosome position169759718
Reported geneNR
Mapped geneSDHDP3 - TERC
Upstream gene id29771
Downstream gene id7012
SNP gene ids
Upstream gene distance49140
Downstream gene distance4892
SNP risk allelers12638862-A
SNPsrs12638862
Merged0
SNP id current12638862
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.74
P value0.000002
Pvalue mlog5.69897000433601
P value text(Any IgH translocation vs. controls)
Or beta1.37
%95 Ci[1.20-1.56]
PlatformIllumina [414804] (imputed)
CNVN
Mapped traitmultiple myeloma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001378
Study accessionGCST001906