SNP Detail For rs12627970
1.Mapping Information
Human SNP ID rs12627970
Human chromosome chr22
Human SNP position 39325740
Pig chromosome chr5
Pig SNP position 6213218
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitInflammatory bowel disease
Initial sample12,882 European ancestry cases, 21,770 European ancestry controls
Replication sample25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region22q13.1
Chromosome idchr22
Chromosome position39325740
Reported geneNR
Mapped geneRPL3 - SYNGR1
Upstream gene id6122
Downstream gene id9145
SNP gene ids
Upstream gene distance6075
Downstream gene distance24209
SNP risk allelers12627970-G
SNPsrs12627970
Merged
SNP id current12627970
Contextregulatory_region_variant
Intergenic1
Allele frequency0.2081
P value0.000000000000000002
Pvalue mlog17.698970004336
P value text(EA)
Or beta1.1155151
%95 Ci[1.09-1.14]
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST003043