Human SNP ID | rs1262476 |
---|---|
Human chromosome | chr6 |
Human SNP position | 126665850 |
Pig chromosome | chr1 |
Pig SNP position | 40234188 |
PubMed ID | 24945404 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24945404 |
Study | Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment. |
Disease/Trait | Bone mineral density (paediatric, upper limb) |
Initial sample | 8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children |
Replication sample | NA |
Region | 6q22.32 |
Chromosome id | chr6 |
Chromosome position | 126665850 |
Reported gene | CENPW, RSPO3 |
Mapped gene | PRELID1P1 - RPS4XP9 |
Upstream gene id | 728666 |
Downstream gene id | 442257 |
SNP gene ids | |
Upstream gene distance | 21452 |
Downstream gene distance | 17163 |
SNP risk allele | rs1262476-G |
SNPs | rs1262476 |
Merged | 0 |
SNP id current | 1262476 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.77 |
P value | 0.000000003 |
Pvalue mlog | 8.52287874528033 |
P value text | |
Or beta | 0.104 |
%95 Ci | [0.069-0.139] unit increase |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST002496 |
PubMed ID | 24945404 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24945404 |
Study | Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment. |
Disease/Trait | Bone mineral density (paediatric, upper limb) |
Initial sample | 8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children |
Replication sample | NA |
Region | 6q22.32 |
Chromosome id | chr6 |
Chromosome position | 126665850 |
Reported gene | CENPW, RSPO3 |
Mapped gene | PRELID1P1 - RPS4XP9 |
Upstream gene id | 728666 |
Downstream gene id | 442257 |
SNP gene ids | |
Upstream gene distance | 21452 |
Downstream gene distance | 17163 |
SNP risk allele | rs1262476-G |
SNPs | rs1262476 |
Merged | 0 |
SNP id current | 1262476 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.00000004 |
Pvalue mlog | 7.39794000867203 |
P value text | (EA) |
Or beta | 0.1045 |
%95 Ci | [0.067-0.142] unit increase |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST002496 |