Human SNP ID | rs12621643 |
---|---|
Human chromosome | chr2 |
Human SNP position | 223053265 |
Pig chromosome | chr15 |
Pig SNP position | 138616974 |
PubMed ID | 19684603 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19684603 |
Study | Germline genomic variants associated with childhood acute lymphoblastic leukemia. |
Disease/Trait | Acute lymphoblastic leukemia (childhood) |
Initial sample | 317 European ancestry cases, 17,958 European ancestry controls |
Replication sample | NA |
Region | 2q36.1 |
Chromosome id | chr2 |
Chromosome position | 223053265 |
Reported gene | KCNE4 |
Mapped gene | KCNE4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23704 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12621643-T |
SNPs | rs12621643 |
Merged | 0 |
SNP id current | 12621643 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.28 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 1.48 |
%95 Ci | [1.20-1.70] |
Platform | Affymetrix [307944] |
CNV | N |
Mapped trait | acute lymphoblastic leukemia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000220 |
Study accession | GCST000464 |