SNP Detail For rs12621643
1.Mapping Information
Human SNP ID rs12621643
Human chromosome chr2
Human SNP position 223053265
Pig chromosome chr15
Pig SNP position 138616974
2.Annotation Information
PubMed ID19684603
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19684603
StudyGermline genomic variants associated with childhood acute lymphoblastic leukemia.
Disease/TraitAcute lymphoblastic leukemia (childhood)
Initial sample317 European ancestry cases, 17,958 European ancestry controls
Replication sampleNA
Region2q36.1
Chromosome idchr2
Chromosome position223053265
Reported geneKCNE4
Mapped geneKCNE4
Upstream gene id
Downstream gene id
SNP gene ids23704
Upstream gene distance
Downstream gene distance
SNP risk allelers12621643-T
SNPsrs12621643
Merged0
SNP id current12621643
Contextmissense_variant
Intergenic0
Allele frequency0.28
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta1.48
%95 Ci[1.20-1.70]
PlatformAffymetrix [307944]
CNVN
Mapped traitacute lymphoblastic leukemia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000220
Study accessionGCST000464