Human SNP ID | rs12611820 |
---|---|
Human chromosome | chr2 |
Human SNP position | 2479854 |
Pig chromosome | chr3 |
Pig SNP position | 141074776 |
PubMed ID | 25147783 |
---|---|
Journal | Front Public Health |
Link | www.ncbi.nlm.nih.gov/pubmed/25147783 |
Study | Genetic Associations with Plasma B12, B6, and Folate Levels in an Ischemic Stroke Population from the Vitamin Intervention for Stroke Prevention (VISP) Trial. |
Disease/Trait | Vitamin B levels in ischemic stroke |
Initial sample | 1,725 European ancestry cases, 258 African ancestry cases, 117 cases |
Replication sample | NA |
Region | 2p25.3 |
Chromosome id | chr2 |
Chromosome position | 2479854 |
Reported gene | MYT1L |
Mapped gene | MYT1L - LOC105373389 |
Upstream gene id | 23040 |
Downstream gene id | 105373389 |
SNP gene ids | |
Upstream gene distance | 148479 |
Downstream gene distance | 4554 |
SNP risk allele | rs12611820-C |
SNPs | rs12611820 |
Merged | 0 |
SNP id current | 12611820 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.245 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (Vitamin B9 - Folate) |
Or beta | 0.169 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [737081] |
CNV | N |
Mapped trait | folic acid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005111 |
Study accession | GCST002559 |