SNP Detail For rs12611820
1.Mapping Information
Human SNP ID rs12611820
Human chromosome chr2
Human SNP position 2479854
Pig chromosome chr3
Pig SNP position 141074776
2.Annotation Information
PubMed ID25147783
JournalFront Public Health
Linkwww.ncbi.nlm.nih.gov/pubmed/25147783
StudyGenetic Associations with Plasma B12, B6, and Folate Levels in an Ischemic Stroke Population from the Vitamin Intervention for Stroke Prevention (VISP) Trial.
Disease/TraitVitamin B levels in ischemic stroke
Initial sample1,725 European ancestry cases, 258 African ancestry cases, 117 cases
Replication sampleNA
Region2p25.3
Chromosome idchr2
Chromosome position2479854
Reported geneMYT1L
Mapped geneMYT1L - LOC105373389
Upstream gene id23040
Downstream gene id105373389
SNP gene ids
Upstream gene distance148479
Downstream gene distance4554
SNP risk allelers12611820-C
SNPsrs12611820
Merged0
SNP id current12611820
Contextintergenic_variant
Intergenic1
Allele frequency0.245
P value0.000001
Pvalue mlog6
P value text(Vitamin B9 - Folate)
Or beta0.169
%95 Ci[NR] unit decrease
PlatformIllumina [737081]
CNVN
Mapped traitfolic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005111
Study accessionGCST002559