Human SNP ID | rs12604483 |
---|---|
Human chromosome | chr18 |
Human SNP position | 56188294 |
Pig chromosome | chr1 |
Pig SNP position | 116075740 |
PubMed ID | 21160409 |
---|---|
Journal | AIDS |
Link | www.ncbi.nlm.nih.gov/pubmed/21160409 |
Study | Common human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population. |
Disease/Trait | HIV-1 susceptibility |
Initial sample | 531 Sub-Saharan African ancestry cases, 848 Sub-Saharan African ancestry controls |
Replication sample | NA |
Region | 18q21.2 |
Chromosome id | chr18 |
Chromosome position | 56188294 |
Reported gene | AC009271.7 |
Mapped gene | LOC105372132 - LOC105372134 |
Upstream gene id | 105372132 |
Downstream gene id | 105372134 |
SNP gene ids | |
Upstream gene distance | 38192 |
Downstream gene distance | 71598 |
SNP risk allele | rs12604483-? |
SNPs | rs12604483 |
Merged | 0 |
SNP id current | 12604483 |
Context | non_coding_transcript_exon_variant |
Intergenic | 1 |
Allele frequency | 0.3 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [~ 800000] |
CNV | N |
Mapped trait | HIV-1 infection |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000180 |
Study accession | GCST000918 |