SNP Detail For rs12604483
1.Mapping Information
Human SNP ID rs12604483
Human chromosome chr18
Human SNP position 56188294
Pig chromosome chr1
Pig SNP position 116075740
2.Annotation Information
PubMed ID21160409
JournalAIDS
Linkwww.ncbi.nlm.nih.gov/pubmed/21160409
StudyCommon human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population.
Disease/TraitHIV-1 susceptibility
Initial sample531 Sub-Saharan African ancestry cases, 848 Sub-Saharan African ancestry controls
Replication sampleNA
Region18q21.2
Chromosome idchr18
Chromosome position56188294
Reported geneAC009271.7
Mapped geneLOC105372132 - LOC105372134
Upstream gene id105372132
Downstream gene id105372134
SNP gene ids
Upstream gene distance38192
Downstream gene distance71598
SNP risk allelers12604483-?
SNPsrs12604483
Merged0
SNP id current12604483
Contextnon_coding_transcript_exon_variant
Intergenic1
Allele frequency0.3
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta
%95 Ci
PlatformIllumina [~ 800000]
CNVN
Mapped traitHIV-1 infection
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000180
Study accessionGCST000918