Human SNP ID | rs1260333 |
---|---|
Human chromosome | chr2 |
Human SNP position | 27525757 |
Pig chromosome | chr3 |
Pig SNP position | 118826228 |
PubMed ID | 20864672 |
---|---|
Journal | Arterioscler Thromb Vasc Biol |
Link | www.ncbi.nlm.nih.gov/pubmed/20864672 |
Study | Genetic variants influencing circulating lipid levels and risk of coronary artery disease. |
Disease/Trait | Triglycerides |
Initial sample | up to 17,723 European ancestry individuals |
Replication sample | up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals |
Region | 2p23.3 |
Chromosome id | chr2 |
Chromosome position | 27525757 |
Reported gene | GCKR |
Mapped gene | GCKR - C2orf16 |
Upstream gene id | 2646 |
Downstream gene id | 84226 |
SNP gene ids | |
Upstream gene distance | 2068 |
Downstream gene distance | 50765 |
SNP risk allele | rs1260333-C |
SNPs | rs1260333 |
Merged | 0 |
SNP id current | 1260333 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.55 |
P value | 2E-19 |
Pvalue mlog | 18.698970004336 |
P value text | |
Or beta | 0.05 |
%95 Ci | [0.04-0.06] unit decrease |
Platform | Affymetrix, Illumina, Perlegen [2155369] (imputed) |
CNV | N |
Mapped trait | triglyceride measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004530 |
Study accession | GCST000809 |
PubMed ID | 26582766 |
Journal | Circ Cardiovasc Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26582766 |
Study | Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations. |
Disease/Trait | Triglycerides |
Initial sample | 8,344 Han Chinese ancestry individuals |
Replication sample | 14,739 Han Chinese ancestry individuals |
Region | 2p23.3 |
Chromosome id | chr2 |
Chromosome position | 27525757 |
Reported gene | GCKR |
Mapped gene | GCKR - C2orf16 |
Upstream gene id | 2646 |
Downstream gene id | 84226 |
SNP gene ids | |
Upstream gene distance | 2068 |
Downstream gene distance | 50765 |
SNP risk allele | rs1260333-A |
SNPs | rs1260333 |
Merged | 0 |
SNP id current | 1260333 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.52 |
P value | 2E-21 |
Pvalue mlog | 20.698970004336 |
P value text | |
Or beta | 0.022 |
%95 Ci | [0.018-0.026] unit increase |
Platform | Affymetrix, Illumina [2573667] (imputed) |
CNV | N |
Mapped trait | triglyceride measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004530 |
Study accession | GCST003217 |
PubMed ID | 26582766 |
Journal | Circ Cardiovasc Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26582766 |
Study | Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations. |
Disease/Trait | Cholesterol, total |
Initial sample | 8,344 Han Chinese ancestry individuals |
Replication sample | 14,739 Han Chinese ancestry individuals |
Region | 2p23.3 |
Chromosome id | chr2 |
Chromosome position | 27525757 |
Reported gene | GCKR |
Mapped gene | GCKR - C2orf16 |
Upstream gene id | 2646 |
Downstream gene id | 84226 |
SNP gene ids | |
Upstream gene distance | 2068 |
Downstream gene distance | 50765 |
SNP risk allele | rs1260333-A |
SNPs | rs1260333 |
Merged | 0 |
SNP id current | 1260333 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.52 |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | |
Or beta | 1.773 |
%95 Ci | [1.15-2.4] unit increase |
Platform | Affymetrix, Illumina [2573667] (imputed) |
CNV | N |
Mapped trait | total cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004574 |
Study accession | GCST003214 |